SNP Profiles of PA 56 [PER] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	GG	CC	GG	AC	CC	AG	CC	GG	GG	AA	CC
1._RUQ_32	_	_	CC	GG	CC	_	AC	CC	AG	CC	_	_	AA	_
2._PA_56_[PER]	_	_	CC	GG	CC	_	AC	CC	AG	CC	_	_	AA	_
3._PA_56_[PER]	_	_	CC	GG	CC	_	AA	CC	AG	CC	_	_	AA	_
4._PA_56_[PER]	_	_	CC	GG	CC	_	AA	CC	AG	CC	_	_	AA	_
5._PA_56_[PER]	_	_	CC	GG	CC	_	AA	CC	AG	CC	_	_	AA	_
6._PA_56_[PER]	_	_	CC	GG	CC	_	AA	CC	AG	CC	_	_	AA	_
7._PA_56_[PER]	_	_	CC	GG	CC	_	AA	CC	AG	CC	_	_	_	_
8._RUQ_32	_	_	CC	_	_	_	_	_	AG	_	GG	_	_	_
9._NA	TT	CC	CC	GG	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
10._NA	TT	CC	CC	GG	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
11._NA	TT	CC	CC	GG	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
12._NA	TT	CC	CC	GG	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
13._NA	TT	CC	CC	GG	CC	GG	AA	CC	AG	CC	GG	GG	_	CC
14._-	AA	CC	CC	CC	GG	GG	AC	GG	AG	GG	GG	GG	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AC	CT	GT	CG	CC	TT	TT	CT	GG	AG	TT	AA	GG
1._RUQ_32	AA	AC	CT	GT	CG	CC	_	TT	_	GG	_	_	_	GG
2._PA_56_[PER]	AA	AC	CT	GT	CG	CC	_	TT	_	GG	_	_	_	GG
3._PA_56_[PER]	AA	AC	CT	GT	CG	CC	_	TT	_	GG	_	_	_	GG
4._PA_56_[PER]	AA	AC	CT	GT	CG	CC	_	TT	_	GG	_	_	_	GG
5._PA_56_[PER]	AA	AC	CT	GT	CG	CC	_	TT	_	GG	_	_	_	GG
6._PA_56_[PER]	AA	AC	CT	GT	CG	CC	_	TT	_	GG	_	_	_	GG
7._PA_56_[PER]	AA	AC	CT	GT	CG	CC	_	TT	_	GG	_	_	_	GG
8._RUQ_32	_	AA	_	_	CG	CC	_	_	CT	GG	AG	_	AA	GG
9._NA	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
10._NA	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
11._NA	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
12._NA	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
13._NA	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
14._-	_	AC	_	AC	CG	CC	AA	AA	_	CC	AG	AA	AA	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AG	CC	CC	GG	GG	TT	TT	CT	CC	CT	CG	GG
1._RUQ_32	_	CC	AG	_	CC	_	_	_	TT	_	_	CT	CG	GG
2._PA_56_[PER]	_	CC	AG	_	CC	_	_	_	TT	_	_	CT	CG	GG
3._PA_56_[PER]	_	CC	AG	_	CC	_	_	_	TT	_	_	CT	CG	GG
4._PA_56_[PER]	_	CC	AG	_	CC	_	_	_	TT	_	_	CT	CG	GG
5._PA_56_[PER]	_	CC	AG	_	CC	_	_	_	TT	_	_	CT	CG	GG
6._PA_56_[PER]	_	CC	AG	_	CC	_	_	_	TT	_	_	CT	CG	GG
7._PA_56_[PER]	_	CC	AG	_	CC	_	_	_	TT	_	_	CT	CG	GG
8._RUQ_32	_	_	AG	_	_	_	_	_	TT	_	_	_	CG	_
9._NA	CC	CC	AG	CT	CC	GG	GG	TT	TT	TT	CC	CT	CG	GG
10._NA	CC	CC	AG	CT	CC	GG	GG	TT	TT	TT	CC	CT	CG	GG
11._NA	CC	CC	AG	CT	CC	GG	GG	TT	TT	TT	CC	CT	CG	GG
12._NA	CC	CC	AG	CT	CC	GG	GG	TT	TT	TT	CC	CT	CG	GG
13._NA	CC	CC	AG	CT	CC	GG	GG	TT	TT	TT	CC	CT	CG	GG
14._-	_	GG	AG	_	GG	CC	GG	_	AA	AG	GG	AG	CG	GG

Input profile: PA_56_[PER] RUQ_32

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._PA_56_[PER] RUQ_32

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._PA_56_[PER]

identical
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 238

Dapeng Zhang, 2016

3._PA_56_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 6

Dapeng Zhang, 2016

4._PA_56_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 4

Dapeng Zhang, 2016

5._PA_56_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 3

Dapeng Zhang, 2016

6._PA_56_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 2

Dapeng Zhang, 2016

7._PA_56_[PER]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._PA_56_[PER] RUQ_32

96.4 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

9._PA_56_[PER] NA

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: Dead

10._PA_56_[PER] NA

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: Dead

11._PA_56_[PER] NA

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

12._PA_56_[PER] NA

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

13._PA_56_[PER] NA

95.1 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

14._PA_56_[PER] -

47.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 76, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484